JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM174B_chr15_92612448_92660775	0/0	t0028	2125	2	0	0	2	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0029	2125	2	0	0	2	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0030	2127	2	1	0	0	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0031	2124	2	2	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0032	2109	2	1	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0033	2127	2	1	0	0	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0034	2124	2	2	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0035	2126	2	0	0	2	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0036	2110	2	2	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0037	2124	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0038	2125	1	0	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0039	2124	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0040	2124	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0041	2114	1	0	0	0	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0042	2125	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0043	2125	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0044	2122	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0045	2124	1	0	0	0	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0046	2124	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0047	2126	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0048	2126	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0049	2124	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0050	2125	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0051	2125	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0052	2108	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0053	2125	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0054	2124	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0055	2123	1	0	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0056	2125	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0057	2127	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0058	2126	1	0	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0059	2126	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0060	2126	1	0	0	0	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0061	2125	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0062	2125	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0063	2126	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0064	2125	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0065	2126	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0066	2125	1	0	0	0	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174C_chr19_1270530_1284228	1/1	t0001	472	225	66	51	60	11	35	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	t0002	472	13	2	8	0	1	2	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	t0003	472	8	5	3	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	t0004	472	3	3	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	t0005	472	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	t0006	472	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	t0007	472	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	t0008	472	1	0	0	0	0	1	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	t0009	472	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM177A1_chr14_35041272_35088378	0/1	t0001	2336	111	13	19	64	6	8	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0002	2341	70	7	13	40	2	8	copy fasta	FAM177A1	chr14	35041272	35088378