JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM177A1_chr14_35041272_35088378	1/0	t0003	2343	68	25	10	25	3	4	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0004	2341	34	2	18	5	2	7	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0005	2339	33	20	2	5	0	6	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0006	2341	12	7	3	0	0	2	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0007	2340	9	0	4	4	0	1	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0008	2341	9	9	0	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0009	2337	7	1	4	0	1	1	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0010	2341	6	5	1	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0011	2341	2	2	0	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0012	2341	2	1	1	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0013	2341	1	1	0	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0014	2340	1	1	0	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0015	2341	1	0	0	1	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0016	2341	1	1	0	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0017	2334	1	0	1	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0018	2343	1	0	0	0	0	1	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	t0019	2337	1	1	0	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177B_chr1_222732202_222756004	0/1	t0001	1200	241	27	44	125	13	31	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0002	1201	118	42	19	41	4	12	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	1/0	t0003	1201	13	3	5	0	1	3	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0004	1202	7	7	0	0	0	0	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0005	1199	7	6	0	1	0	0	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0006	1202	4	4	0	0	0	0	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0007	1201	3	3	0	0	0	0	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0008	1201	2	2	0	0	0	0	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0009	1202	1	1	0	0	0	0	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0010	1201	1	1	0	0	0	0	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0011	1201	1	0	0	0	0	1	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0012	1200	1	0	0	1	0	0	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	t0013	1200	1	0	0	0	0	1	copy fasta	FAM177B	chr1	222732202	222756004
FAM178B_chr2_96870885_96991580	1/1	t0001	659	236	74	48	82	2	28	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	t0002	655	6	6	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	t0003	659	2	2	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	t0004	659	1	0	1	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	t0005	659	1	1	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	t0006	616	1	0	1	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	t0007	702	1	1	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	t0008	659	1	0	0	1	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	t0009	659	1	0	0	1	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM180A_chr7_135724592_135753813	1/0	t0001	1253	115	17	23	55	7	12	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0002	1253	108	16	27	56	1	8	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/1	t0003	1253	100	19	19	42	6	13	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0004	1249	31	3	3	18	3	4	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0005	1254	27	0	1	24	0	2	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0006	1253	23	16	5	1	0	1	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0007	1249	15	15	0	0	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0008	1253	4	1	0	3	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0009	1254	3	2	0	0	0	1	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0010	1253	3	0	0	3	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0011	1253	2	0	0	2	0	0	copy fasta	FAM180A	chr7	135724592	135753813