JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM180A_chr7_135724592_135753813	0/0	t0012	1253	1	0	0	0	1	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0013	1253	1	0	0	1	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0014	1253	1	0	0	0	0	1	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0015	1253	1	1	0	0	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	t0016	1249	1	0	0	1	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180B_chr11_47581678_47594194	0/0	t0001	856	103	7	25	52	4	15	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0002	850	93	33	11	40	3	6	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0003	858	74	13	9	47	0	5	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0004	854	47	3	5	26	3	10	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0005	852	24	7	6	9	1	1	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0006	862	13	0	7	1	3	2	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0007	860	12	2	3	5	1	1	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0008	834	11	11	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/1	t0009	844	8	0	7	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0010	864	8	0	6	0	1	1	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	1/0	t0011	852	5	3	0	1	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0012	856	3	3	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0013	846	3	1	1	0	0	1	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0014	836	3	3	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0015	852	2	2	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0016	858	1	1	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0017	854	1	0	0	1	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0018	856	1	0	1	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0019	863	1	0	1	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	t0020	843	1	1	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM181A_chr14_93922344_93934608	0/1	t0001	643	394	92	72	175	14	40	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	t0002	643	22	0	0	22	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	t0003	643	8	0	0	8	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	t0004	643	7	0	0	0	0	7	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	t0005	643	2	2	0	0	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	t0006	643	2	2	0	0	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	t0007	643	1	0	0	0	0	1	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	t0008	643	1	1	0	0	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	t0009	627	1	1	0	0	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	t0010	643	1	0	0	1	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181B_chr11_82724940_82738864	0/0	t0001	2645	169	19	21	112	5	12	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/1	t0002	2645	124	9	28	61	8	17	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0003	2645	46	5	20	8	1	12	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0004	2645	36	29	2	0	2	3	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0005	2645	15	15	0	0	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	1/0	t0006	2645	6	0	0	5	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0007	2645	4	4	0	0	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0008	2641	4	4	0	0	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0009	2645	3	0	0	3	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0010	2669	3	0	0	3	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0011	2645	3	0	0	3	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0012	2630	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0013	2645	1	1	0	0	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0014	2645	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0015	2645	1	0	0	0	0	1	copy fasta	FAM181B	chr11	82724940	82738864