JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM181B_chr11_82724940_82738864	0/0	t0016	2645	1	1	0	0	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0017	2645	1	0	0	0	0	1	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0018	2645	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0019	2645	1	0	0	0	0	1	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0020	2645	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0021	2645	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0022	2645	1	0	1	0	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0023	2645	1	1	0	0	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	t0024	2645	1	0	0	0	0	1	copy fasta	FAM181B	chr11	82724940	82738864
FAM184A_chr6_118954763_119083664	0/1	t0001	709	222	60	52	84	7	18	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	1/0	t0002	706	26	9	7	3	1	5	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	t0003	709	13	0	6	7	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	t0004	709	10	10	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	t0005	709	7	7	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	t0006	709	2	1	1	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	t0007	709	2	0	0	2	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	t0008	709	2	0	0	2	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	t0009	709	1	0	0	0	0	1	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	t0010	709	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184B_chr4_17624306_17786621	0/1	t0001	3519	83	14	19	28	5	16	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	1/0	t0002	3549	11	3	2	3	1	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0003	3527	11	0	3	8	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0004	3545	7	2	5	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0005	3518	7	7	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0006	3518	7	7	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0007	3547	5	5	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0008	3546	5	0	3	1	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0009	3544	5	5	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0010	3529	5	3	0	0	2	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0011	3547	4	0	0	0	1	3	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0012	3519	4	4	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0013	3548	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0014	3546	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0015	3519	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0016	3520	3	0	0	2	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0017	3519	3	0	1	0	0	2	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0018	3530	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0019	3529	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0020	3549	2	0	0	2	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0021	3550	2	1	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0022	3549	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0023	3546	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0024	3546	2	0	1	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0025	3544	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0026	3543	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0027	3534	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0028	3528	2	0	0	0	0	2	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0029	3525	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0030	3522	2	1	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0031	3519	2	0	0	0	0	2	copy fasta	FAM184B	chr4	17624306	17786621