JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM184B_chr4_17624306_17786621	0/0	t0032	3519	2	0	0	2	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0033	3519	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0034	3519	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0035	3560	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0036	3559	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0037	3549	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0038	3549	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0039	3549	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0040	3549	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0041	3546	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0042	3545	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0043	3545	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0044	3539	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0045	3545	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0046	3538	1	0	0	0	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0047	3534	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0048	3529	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0049	3528	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0050	3517	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0051	3519	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0052	3518	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0053	3517	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0054	3522	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0055	3519	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0056	3519	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0057	3519	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0058	3519	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0059	3519	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0060	3520	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0061	3521	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0062	3521	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0063	3518	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0064	3529	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0065	3529	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0066	3526	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0067	3546	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0068	3539	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	t0069	3520	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM185A_chr7_102743999_102814225	1/1	t0001	1033	293	76	58	109	15	33	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	t0002	1033	37	0	2	26	1	8	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	t0003	1033	35	0	8	26	0	1	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	t0004	1033	7	7	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	t0005	1033	3	3	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	t0006	1033	2	2	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	t0007	1033	1	1	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	t0008	1033	1	1	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	t0009	1033	1	0	0	1	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM186A_chr12_50322309_50401609	1/1	t0001	200	332	86	62	140	10	32	copy fasta	FAM186A	chr12	50322309	50401609
FAM186B_chr12_49582505_49610639	1/1	t0001	263	250	73	64	65	12	34	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	t0002	263	9	9	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639