JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM186B_chr12_49582505_49610639	0/0	t0003	263	5	0	0	5	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	t0004	263	2	2	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM187A_chr17_44898433_44910390	1/0	t0001	717	285	70	44	130	14	26	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/1	t0002	717	93	18	21	41	2	10	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	t0003	717	41	7	9	15	0	10	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	t0004	717	3	0	1	0	2	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	t0005	717	2	0	0	0	0	2	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	t0006	705	1	1	0	0	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	t0007	717	1	0	1	0	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	t0008	717	1	1	0	0	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	t0009	717	1	1	0	0	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187B_chr19_35219800_35233739	1/1	t0001	85	448	96	76	214	16	44	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	t0002	85	2	0	2	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM193A_chr4_2531647_2737573	1/1	t0001	975	179	54	26	70	8	19	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0002	975	96	5	28	43	5	15	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0003	975	16	14	0	0	1	1	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0004	975	15	2	2	9	0	2	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0005	975	5	5	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0006	975	4	0	1	3	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0007	975	3	2	1	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0008	974	2	2	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0009	974	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0010	975	1	0	1	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0011	975	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0012	975	1	0	1	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0013	975	1	0	0	0	0	1	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0014	974	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0015	975	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0016	975	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0017	975	1	0	0	1	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	t0018	975	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193B_chr5_177514789_177559563	0/0	t0001	498	88	8	21	43	5	11	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0002	498	58	0	11	44	0	3	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0003	504	25	10	11	4	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0004	510	15	1	0	14	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0005	516	12	2	2	8	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0006	510	11	0	5	2	1	3	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0007	519	11	0	2	7	0	2	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0008	495	7	6	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0009	507	7	6	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0010	495	6	0	5	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0011	501	6	3	2	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0012	504	6	5	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0013	507	6	5	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0014	513	6	1	0	1	0	4	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0015	522	6	3	0	3	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0016	501	5	3	2	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0017	510	5	3	0	1	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0018	513	5	0	1	4	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0019	513	5	0	1	2	0	2	copy fasta	FAM193B	chr5	177514789	177559563