JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM193B_chr5_177514789_177559563	0/0	t0020	534	5	3	0	2	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0021	501	4	4	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0022	507	4	1	0	0	2	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0023	525	4	1	0	2	1	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0024	498	3	1	0	1	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/1	t0025	501	3	0	1	0	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0026	516	3	0	0	3	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0027	525	3	0	0	2	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0028	528	3	1	0	1	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0029	537	3	1	0	2	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	1/0	t0030	499	3	2	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0031	493	3	3	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0032	489	2	1	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0033	495	2	0	0	0	1	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0034	519	2	2	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0035	522	2	0	0	2	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0036	522	2	0	0	1	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0037	531	2	0	0	1	1	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0038	552	2	0	0	1	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0039	498	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0040	498	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0041	501	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0042	504	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0043	504	1	0	0	0	1	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0044	516	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0045	519	1	0	0	0	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0046	519	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0047	525	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0048	531	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0049	531	1	0	0	0	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0050	534	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0051	537	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0052	540	1	0	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0053	543	1	0	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0054	543	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0055	546	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0056	546	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0057	552	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0058	555	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0059	564	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0060	567	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0061	582	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0062	499	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	t0063	507	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM199X_chrX_104161453_104200902	0/0	t0001	6461	80	3	13	53	5	6	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	1/0	t0002	6458	76	10	10	44	0	11	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/1	t0003	6461	44	26	3	11	1	2	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0004	6458	14	0	7	0	1	6	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0005	6460	12	11	1	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0006	6458	9	1	4	4	0	0	copy fasta	FAM199X	chrX	104161453	104200902