JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM199X_chrX_104161453_104200902	0/0	t0007	6458	5	0	1	0	3	1	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0008	6458	4	4	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0009	6461	3	3	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0010	6461	3	0	3	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0011	6458	2	0	0	2	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0012	6458	2	0	0	2	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0013	6461	2	2	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0014	6461	2	0	0	0	2	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0015	6460	2	2	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0016	6461	1	0	0	0	0	1	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0017	6461	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0018	6428	1	0	0	0	0	1	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0019	6457	1	0	1	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0020	6455	1	0	0	0	0	1	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0021	6456	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0022	6461	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0023	6457	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0024	6458	1	0	0	1	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0025	6461	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0026	6457	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0027	6458	1	0	0	1	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0028	6460	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0029	6461	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0030	6461	1	0	0	1	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0031	6461	1	0	0	1	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0032	6461	1	0	1	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0033	6462	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0034	6461	1	0	0	1	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0035	6461	1	0	0	0	1	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0036	6461	1	0	0	1	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0037	6459	1	0	0	1	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0038	6461	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0039	6455	1	0	0	0	0	1	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	t0040	6443	1	0	1	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM200A_chr7_99541300_99557114	1/1	t0001	747	370	86	57	168	14	43	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	t0002	747	2	2	0	0	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	t0003	747	1	0	0	0	0	1	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	t0004	747	1	1	0	0	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	t0005	747	1	1	0	0	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	t0006	747	1	0	0	1	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	t0007	747	1	0	0	1	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	t0008	747	1	0	1	0	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200B_chr4_15676827_15695447	1/0	t0001	2314	300	45	45	168	10	31	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	t0002	2314	40	10	7	12	2	9	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	t0003	2314	34	20	11	0	1	2	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/1	t0004	2311	23	0	8	9	5	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	t0005	2314	10	0	0	10	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	t0006	2314	7	6	1	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	t0007	2314	5	5	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	t0008	2314	3	0	0	3	0	0	copy fasta	FAM200B	chr4	15676827	15695447