JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM20A_chr17_68530116_68606367	0/0	t0013	3063	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0014	3063	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0015	3063	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0016	3063	1	0	0	0	0	1	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0017	3063	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0018	3063	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0019	3063	1	0	1	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0020	3063	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0021	3063	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0022	3063	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0023	3063	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0024	3063	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	t0025	3063	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20B_chr1_179020894_179081567	0/1	t0001	4761	112	23	22	50	7	9	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	1/0	t0002	4762	93	2	25	51	3	11	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0003	4761	65	8	6	47	0	4	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0004	4762	26	0	10	9	2	5	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0005	4762	18	3	1	14	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0006	4761	16	9	2	0	1	4	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0007	4761	10	9	1	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0008	4761	10	9	1	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0009	4761	5	5	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0010	4761	5	0	4	0	1	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0011	4761	4	3	1	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0012	4762	4	2	2	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0013	4762	3	0	0	3	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0014	4762	3	0	0	3	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0015	4761	3	3	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0016	4761	2	2	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0017	4762	2	2	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0018	4761	2	2	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0019	4761	2	2	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0020	4761	2	0	2	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0021	4762	2	0	1	1	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0022	4761	2	0	0	2	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0023	4761	2	0	0	2	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0024	4762	1	1	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0025	4762	1	1	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0026	4745	1	0	0	1	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0027	4762	1	0	0	1	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0028	4762	1	0	0	1	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0029	4761	1	0	0	0	0	1	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0030	4761	1	1	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0031	4761	1	0	0	1	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0032	4762	1	1	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0033	4762	1	1	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0034	4761	1	0	0	1	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0035	4761	1	0	0	1	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0036	4762	1	0	0	1	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	t0037	4762	1	0	0	1	0	0	copy fasta	FAM20B	chr1	179020894	179081567