JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM20B_chr1_179020894_179081567	0/0	t0038	4761	1	1	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM210A_chr18_13658347_13731558	0/1	t0001	3388	157	14	39	75	9	19	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0002	3407	23	1	5	11	4	2	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	1/0	t0003	3392	16	4	3	4	0	4	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0004	3408	15	0	3	7	0	5	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0005	3389	12	6	3	1	1	1	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0006	3386	10	10	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0007	3389	10	10	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0008	3387	6	2	0	2	0	2	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0009	3387	6	6	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0010	3400	6	1	0	3	0	2	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0011	3393	6	2	2	1	0	1	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0012	3409	5	0	1	0	2	2	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0013	3391	3	3	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0014	3386	3	3	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0015	3407	3	0	1	2	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0016	3388	2	1	1	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0017	3406	2	2	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0018	3410	2	2	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0019	3392	2	1	1	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0020	3392	2	2	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0021	3405	2	1	1	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0022	3387	2	2	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0023	3387	2	0	0	2	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0024	3392	2	0	0	0	0	2	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0025	3388	2	0	0	0	0	2	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0026	3389	2	0	2	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0027	3411	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0028	3392	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0029	3389	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0030	3408	1	0	0	1	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0031	3409	1	0	0	1	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0032	3388	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0033	3388	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0034	3388	1	0	0	1	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0035	3388	1	0	1	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0036	3388	1	0	0	0	0	1	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0037	3404	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0038	3404	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0039	3406	1	0	1	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0040	3410	1	0	1	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0041	3415	1	0	0	1	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0042	3420	1	0	1	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0043	3398	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0044	3392	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0045	3392	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0046	3393	1	0	0	0	0	1	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0047	3389	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0048	3390	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	t0049	3400	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558