JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM210B_chr20_56353974_56373663	1/0	t0001	2409	183	31	32	84	7	28	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/1	t0002	2409	140	18	22	80	4	15	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0003	2410	35	31	3	0	0	1	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0004	2409	4	4	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0005	2410	3	0	0	3	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0006	2409	3	3	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0007	2409	3	3	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0008	2409	3	3	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0009	2409	1	1	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0010	2410	1	1	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0011	2409	1	0	1	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0012	2410	1	1	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0013	2409	1	0	0	0	0	1	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0014	2409	1	0	0	1	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0015	2410	1	1	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0016	2409	1	0	1	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0017	2409	1	0	0	1	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0018	2409	1	1	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0019	2409	1	0	0	0	0	1	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0020	2410	1	0	0	1	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0021	2409	1	1	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0022	2410	1	0	1	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0023	2409	1	0	0	1	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0024	2409	1	1	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0025	2409	1	0	0	1	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	t0026	2409	1	0	0	0	1	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM216A_chr12_110463845_110495385	1/1	t0001	280	306	92	59	102	16	35	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	t0002	280	2	0	0	0	0	2	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	t0003	280	1	0	1	0	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	t0004	280	1	0	0	0	0	1	copy fasta	FAM216A	chr12	110463845	110495385
FAM216B_chr13_42776584_42796549	1/0	t0001	2855	110	4	13	75	4	13	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0002	2844	95	22	19	45	1	8	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0003	2846	88	26	21	31	4	6	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0004	2860	59	4	8	33	3	11	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0005	2848	10	1	6	0	1	2	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0006	2844	9	0	0	9	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0007	2858	8	0	1	6	0	1	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0008	2844	8	0	1	0	4	3	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0009	2853	7	6	1	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0010	2864	5	0	1	3	0	1	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0011	2855	5	4	1	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0012	2844	5	5	0	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0013	2844	4	2	0	0	0	2	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0014	2868	4	3	1	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0015	2862	3	0	0	3	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0016	2855	3	3	0	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0017	2866	2	0	0	2	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0018	2859	2	0	0	2	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/1	t0019	2857	2	0	1	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0020	2856	2	1	0	1	0	0	copy fasta	FAM216B	chr13	42776584	42796549