JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM216B_chr13_42776584_42796549	0/0	t0021	2855	2	2	0	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0022	2846	2	0	2	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0023	2844	1	1	0	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0024	2864	1	0	1	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0025	2860	1	0	1	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0026	2860	1	0	0	1	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0027	2855	1	0	1	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0028	2855	1	0	0	1	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0029	2854	1	0	0	1	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0030	2854	1	0	0	0	1	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0031	2854	1	0	0	1	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0032	2853	1	1	0	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0033	2848	1	0	1	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0034	2848	1	0	0	1	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0035	2845	1	1	0	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0036	2855	1	0	0	1	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0037	2855	1	0	0	0	0	1	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0038	2846	1	0	0	1	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	t0039	2860	1	0	0	1	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM217A_chr6_4063367_4084137	0/1	t0001	650	214	11	43	110	11	38	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	t0002	650	120	45	12	58	4	1	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	t0003	650	42	8	16	16	1	1	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	t0004	650	38	27	6	2	2	1	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	1/0	t0005	650	8	3	3	0	0	1	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	t0006	650	4	4	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	t0007	650	4	0	2	0	0	2	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	t0008	650	2	0	0	2	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	t0009	650	1	0	0	1	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	t0010	650	1	0	0	1	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217B_chr20_59935389_59953680	0/1	t0001	3935	284	50	58	133	10	32	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0002	3935	15	6	1	6	1	1	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0003	3935	11	0	1	10	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0004	3934	9	9	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0005	3935	6	6	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0006	3935	5	4	1	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0007	3934	4	0	0	2	2	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0008	3935	3	0	0	0	1	2	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0009	3935	3	2	1	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	1/0	t0010	3935	3	0	0	0	1	1	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0011	3934	3	3	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0012	3934	3	0	3	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0013	3935	2	2	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0014	3935	2	0	0	2	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0015	3934	2	2	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0016	3935	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0017	3935	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0018	3935	1	0	1	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0019	3935	1	1	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0020	3935	1	1	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0021	3935	1	0	0	0	0	1	copy fasta	FAM217B	chr20	59935389	59953680