JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM217B_chr20_59935389_59953680	0/0	t0022	3935	1	0	0	0	0	1	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0023	3900	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0024	3935	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0025	3935	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0026	3935	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0027	3935	1	0	0	0	0	1	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0028	3935	1	0	0	0	1	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0029	3934	1	1	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0030	3935	1	0	0	0	0	1	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0031	3935	1	0	1	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0032	3935	1	1	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0033	3935	1	0	0	0	0	1	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0034	3935	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0035	3935	1	0	1	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	t0036	3935	1	0	0	0	0	1	copy fasta	FAM217B	chr20	59935389	59953680
FAM219A_chr9_34393184_34463570	1/0	t0001	3088	120	30	15	59	2	13	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/1	t0002	3088	107	21	25	39	5	16	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0003	3084	46	1	6	36	0	3	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0004	3088	36	1	11	18	2	4	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0005	3088	29	3	3	23	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0006	3088	14	13	1	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0007	3088	13	0	9	0	2	2	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0008	3087	4	0	0	4	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0009	3088	4	4	0	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0010	3088	3	3	0	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0011	3088	2	2	0	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0012	3088	2	2	0	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0013	3088	2	2	0	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0014	3088	2	0	0	2	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0015	3088	1	0	0	1	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0016	3088	1	0	1	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0017	3088	1	1	0	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0018	3088	1	1	0	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0019	3088	1	0	0	1	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0020	3088	1	0	0	1	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0021	3088	1	0	0	0	1	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0022	3088	1	0	0	1	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0023	3088	1	0	0	1	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0024	3088	1	0	1	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0025	3088	1	0	1	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	t0026	3088	1	0	1	0	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219B_chr15_74894992_74911851	0/0	t0001	2679	101	22	10	62	0	7	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	1/0	t0002	2679	92	37	15	19	5	15	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0003	2679	90	1	9	62	3	15	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0004	2679	75	4	28	32	6	5	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0005	2679	29	11	4	13	0	1	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0006	2679	12	0	0	12	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0007	2679	6	0	0	6	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0008	2679	5	5	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0009	2679	3	0	0	0	0	3	copy fasta	FAM219B	chr15	74894992	74911851