JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM219B_chr15_74894992_74911851	0/0	t0010	2679	2	2	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0011	2679	2	0	0	2	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0012	2679	1	0	0	1	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0013	2679	1	1	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0014	2679	1	0	1	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0015	2679	1	0	0	1	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0016	2679	1	0	0	0	0	1	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0017	2679	1	0	1	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0018	2679	1	0	0	0	0	1	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0019	2679	1	1	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0020	2679	1	0	0	1	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0021	2679	1	1	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0022	2679	1	1	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0023	2679	1	0	0	1	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/1	t0024	2679	1	0	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0025	2679	1	0	1	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	t0026	2679	1	0	1	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM220A_chr7_6324411_6353967	0/0	t0001	1441	272	64	33	145	5	25	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	1/1	t0002	1441	97	7	31	27	13	17	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0003	1444	15	3	0	10	0	2	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0004	1433	11	11	0	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0005	1441	5	4	1	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0006	1458	4	1	3	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0007	1440	3	0	3	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0008	1441	2	2	0	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0009	1441	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0010	1434	1	1	0	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0011	1441	1	1	0	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0012	1441	1	0	1	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0013	1441	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0014	1441	1	0	1	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0015	1441	1	1	0	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0016	1441	1	0	1	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0017	1441	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0018	1419	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	t0019	1441	1	1	0	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM221A_chr7_23675199_23707650	0/0	t0001	507	198	24	44	96	11	23	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	1/1	t0002	507	142	56	27	41	5	11	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	t0003	508	47	1	2	37	0	7	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	t0004	507	15	12	3	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	t0005	507	2	0	0	0	1	1	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	t0006	507	2	0	0	2	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	t0007	507	1	1	0	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	t0008	507	1	0	1	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	t0009	508	1	0	0	0	1	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	t0010	507	1	0	1	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221B_chr9_35811391_35833732	0/0	t0001	2349	179	26	37	91	5	20	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/1	t0002	2349	132	21	25	65	4	16	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	1/0	t0003	2349	87	43	6	32	0	5	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0004	2349	8	0	0	8	0	0	copy fasta	FAM221B	chr9	35811391	35833732