JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM221B_chr9_35811391_35833732	0/0	t0005	2349	2	0	0	0	2	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0006	2349	2	0	0	2	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0007	2349	1	0	0	1	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0008	2349	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0009	2349	1	0	0	1	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0010	2349	1	0	0	1	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0011	2349	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0012	2349	1	0	0	0	0	1	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0013	2349	1	0	1	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0014	2349	1	0	0	0	1	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0015	2349	1	0	1	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0016	2349	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0017	2349	1	0	0	1	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	t0018	2349	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM222A_chr12_109708825_109775495	0/1	t0001	2327	184	36	34	81	10	22	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0002	2327	55	19	4	30	1	1	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0003	2327	45	0	0	40	0	5	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	1/0	t0004	2327	24	8	8	4	0	3	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0005	2327	9	9	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0006	2327	8	7	0	0	1	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0007	2315	7	2	0	1	2	2	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0008	2326	5	5	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0009	2315	4	0	4	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0010	2327	3	0	1	0	0	2	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0011	2315	2	0	0	0	0	2	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0012	2327	2	0	0	0	2	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0013	2327	2	0	0	0	0	2	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0014	2309	2	0	2	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0015	2315	1	1	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0016	2315	1	1	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0017	2327	1	0	0	0	0	1	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0018	2327	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0019	2327	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0020	2327	1	1	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0021	2327	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0022	2327	1	0	1	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0023	2327	1	0	1	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0024	2327	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0025	2327	1	0	1	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0026	2327	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0027	2309	1	1	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	t0028	2327	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222B_chr17_28750980_28847790	1/0	t0001	2440	130	33	35	39	4	18	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/1	t0002	2448	54	13	11	19	1	9	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0003	2448	24	0	3	17	1	3	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0004	2447	24	13	3	7	0	1	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0005	2441	12	3	3	6	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0006	2449	4	0	0	4	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0007	2442	2	1	0	1	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0008	2441	2	0	1	0	0	1	copy fasta	FAM222B	chr17	28750980	28847790