JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AK2_chr1_33002986_33041883	0/0	t0021	5251	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0022	5251	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0023	5251	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0024	5251	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0025	5251	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0026	5251	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0027	5251	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0028	5251	1	1	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0029	5251	1	1	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0030	5251	1	1	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0031	5251	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0032	5251	1	1	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK3_chr9_4704556_4746202	0/1	t0001	3536	75	1	25	29	5	14	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0002	3536	71	0	3	57	0	11	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0003	3533	70	9	15	35	2	9	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0004	3529	30	16	6	1	4	3	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0005	3534	27	9	3	13	0	2	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0006	3509	22	11	9	0	1	1	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0007	3536	17	0	0	17	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0008	3536	15	0	0	15	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0009	3536	13	0	1	12	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0010	3537	12	0	9	0	1	2	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0011	3533	8	7	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0012	3534	6	1	0	5	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0013	3529	5	5	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0014	3529	5	0	0	5	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0015	3537	4	0	1	1	1	1	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0016	3534	3	3	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0017	3537	3	0	0	3	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0018	3535	3	1	1	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0019	3536	3	0	0	3	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0020	3535	3	3	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0021	3536	3	0	0	3	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0022	3536	2	2	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0023	3534	2	2	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0024	3529	2	0	2	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0025	3536	2	0	0	2	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0026	3533	2	0	0	0	0	2	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0027	3535	2	1	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0028	3529	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0029	3534	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0030	3537	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0031	3536	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0032	3536	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0033	3534	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0034	3537	1	0	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0035	3536	1	0	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0036	3533	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0037	3529	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0038	3529	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202