JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM222B_chr17_28750980_28847790	0/0	t0009	2440	2	2	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0010	2440	2	0	0	0	0	2	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0011	2440	2	2	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0012	2447	2	2	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0013	2447	2	2	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0014	2443	1	1	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0015	2441	1	0	1	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0016	2441	1	0	0	0	0	1	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0017	2440	1	0	0	0	0	1	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0018	2440	1	0	0	1	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0019	2440	1	0	0	1	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0020	2440	1	1	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0021	2448	1	1	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0022	2449	1	0	0	1	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0023	2448	1	1	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0024	2448	1	0	0	1	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0025	2448	1	0	1	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0026	2447	1	0	0	1	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	t0027	2454	1	1	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM227A_chr22_38573118_38661392	1/0	t0001	8375	81	8	13	45	6	8	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0002	8381	38	7	2	23	2	4	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0003	8380	38	0	4	30	0	4	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0004	8382	21	0	0	20	0	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0005	8376	12	2	7	0	1	2	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0006	8376	10	9	1	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0007	8376	10	6	1	2	0	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0008	8376	9	7	2	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0009	8381	9	9	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0010	8376	7	0	2	3	1	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0011	8382	7	7	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0012	8375	6	0	3	0	2	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0013	8378	5	5	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0014	8376	5	0	4	0	1	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0015	8381	5	0	0	5	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0016	8381	4	4	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/1	t0017	8381	4	1	1	0	1	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0018	8377	3	3	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0019	8375	3	0	3	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0020	8382	3	0	0	3	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0021	8382	3	1	1	0	0	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0022	8382	3	0	0	2	0	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0023	8377	2	2	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0024	8375	2	0	2	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0025	8383	2	0	0	2	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0026	8379	2	0	0	2	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0027	8381	2	1	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0028	8375	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0029	8375	1	0	1	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0030	8376	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0031	8375	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392