JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM227A_chr22_38573118_38661392	0/0	t0032	8379	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0033	8376	1	0	0	0	0	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0034	8376	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0035	8377	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0036	8376	1	0	1	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0037	8376	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0038	8376	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0039	8376	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0040	8375	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0041	8375	1	0	1	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0042	8375	1	0	1	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0043	8375	1	0	1	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0044	8375	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0045	8376	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0046	8383	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0047	8382	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0048	8382	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0049	8379	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0050	8380	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0051	8381	1	0	1	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0052	8380	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0053	8381	1	0	0	0	0	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0054	8381	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0055	8381	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0056	8381	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0057	8380	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0058	8381	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	t0059	8381	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227B_chr15_49321970_49625818	0/1	t0001	1790	94	22	13	42	5	11	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0002	1790	83	10	17	39	4	13	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	1/0	t0003	1790	31	1	4	22	0	3	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0004	1790	29	3	11	2	3	10	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0005	1790	13	1	0	9	0	3	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0006	1790	7	7	0	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0007	1790	6	6	0	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0008	1792	6	5	1	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0009	1790	4	3	1	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0010	1790	4	0	0	0	0	4	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0011	1790	3	3	0	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0012	1790	2	1	1	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0013	1790	2	0	0	0	2	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0014	1790	2	0	0	0	0	2	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0015	1790	1	0	0	1	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0016	1790	1	0	0	1	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0017	1790	1	0	0	0	0	1	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0018	1790	1	0	0	0	0	1	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0019	1790	1	1	0	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0020	1790	1	1	0	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0021	1790	1	1	0	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	t0022	1790	1	1	0	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818