JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM228A_chr2_24170053_24196698	0/0	t0001	1204	170	42	44	60	8	16	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	1/0	t0002	1204	71	37	7	17	4	5	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0003	1204	40	2	7	21	2	8	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0004	1204	37	2	2	30	0	3	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/1	t0005	1204	16	7	0	7	0	1	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0006	1204	5	2	2	0	1	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0007	1204	1	0	0	0	0	1	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0008	1204	1	1	0	0	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0009	1204	1	1	0	0	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0010	1204	1	1	0	0	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0011	1204	1	1	0	0	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0012	1204	1	0	0	0	1	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	t0013	1204	1	0	0	1	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228B_chr2_24118469_24174638	1/1	t0001	395	286	77	58	108	12	29	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	t0002	395	1	0	0	1	0	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	t0003	395	1	1	0	0	0	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	t0004	395	1	0	0	1	0	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	t0005	405	1	0	0	0	0	1	copy fasta	FAM228B	chr2	24118469	24174638
FAM229A_chr1_32356270_32367485	1/1	t0001	558	290	96	52	97	12	31	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	t0002	558	2	0	0	2	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	t0003	558	2	0	0	2	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	t0004	558	1	0	0	1	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	t0005	558	1	0	0	0	0	1	copy fasta	FAM229A	chr1	32356270	32367485
FAM229B_chr6_112082591_112107790	1/1	t0001	2309	177	18	35	89	7	26	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0002	2310	99	14	14	59	3	9	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0003	2309	64	13	17	26	4	4	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0004	2309	36	17	2	14	0	3	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0005	2309	14	14	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0006	2310	5	5	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0007	2302	3	2	1	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0008	2309	3	0	0	3	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0009	2309	2	0	0	2	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0010	2309	2	2	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0011	2309	2	2	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0012	2310	1	1	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0013	2309	1	0	0	1	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0014	2310	1	1	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0015	2310	1	1	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0016	2309	1	1	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0017	2309	1	0	0	1	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0018	2309	1	0	0	1	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0019	2309	1	1	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0020	2309	1	1	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0021	2309	1	0	1	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	t0022	2309	1	1	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM234A_chr16_229821_271096	0/1	t0001	1251	249	44	51	113	10	30	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0002	1251	107	22	18	52	3	12	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0003	1251	22	8	3	9	1	1	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0004	1251	6	6	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0005	1251	6	6	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096