JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM234A_chr16_229821_271096	0/0	t0006	1251	2	1	1	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0007	1251	2	2	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0008	1251	2	1	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0009	1251	2	0	2	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0010	1251	2	2	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0011	1251	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0012	1251	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0013	1251	1	1	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0014	1251	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0015	1251	1	0	0	0	0	1	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0016	1251	1	1	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	t0017	1251	1	0	1	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	1/0	t0018	1251	1	0	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234B_chr12_13039381_13088449	0/1	t0001	2842	280	52	41	152	11	23	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	1/0	t0002	2843	86	24	7	36	3	15	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0003	2841	16	3	5	8	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0004	2842	8	0	6	0	0	2	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0005	2842	7	0	4	0	2	1	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0006	2843	6	6	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0007	2842	2	0	0	2	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0008	2842	2	0	1	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0009	2842	1	0	0	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0010	2842	1	0	1	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0011	2827	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0012	2828	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0013	2842	1	0	0	0	0	1	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0014	2842	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0015	2842	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0016	2842	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0017	2842	1	0	1	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0018	2842	1	0	0	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0019	2842	1	0	0	0	0	1	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0020	2843	1	0	0	0	0	1	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0021	2843	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0022	2843	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0023	2843	1	0	0	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0024	2841	1	0	1	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	t0025	2843	1	0	1	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM236A_chrX_72933206_72943958	0/0	t0001	183	157	29	33	71	8	16	copy fasta	FAM236A	chrX	72933206	72943958
FAM236A_chrX_72933206_72943958	0/0	t0002	183	1	0	1	0	0	0	copy fasta	FAM236A	chrX	72933206	72943958
FAM236B_chrX_72776865_72787660	0/0	t0001	226	106	22	22	45	5	12	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	t0002	226	1	0	1	0	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	t0003	211	1	1	0	0	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	t0004	225	1	0	0	1	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	t0005	226	1	1	0	0	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236C_chrX_72907615_72918401	0/0	t0001	224	195	30	30	112	7	16	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	t0002	226	1	0	0	0	0	1	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	t0003	224	1	0	0	1	0	0	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	t0004	224	1	0	1	0	0	0	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	t0005	223	1	0	1	0	0	0	copy fasta	FAM236C	chrX	72907615	72918401