JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM236D_chrX_72802425_72813210	0/0	t0001	224	178	32	33	95	2	16	copy fasta	FAM236D	chrX	72802425	72813210
FAM236D_chrX_72802425_72813210	0/0	t0002	224	5	5	0	0	0	0	copy fasta	FAM236D	chrX	72802425	72813210
FAM236D_chrX_72802425_72813210	0/0	t0003	224	1	0	0	0	0	1	copy fasta	FAM236D	chrX	72802425	72813210
FAM236D_chrX_72802425_72813210	0/0	t0004	224	1	0	1	0	0	0	copy fasta	FAM236D	chrX	72802425	72813210
FAM236D_chrX_72802425_72813210	0/0	t0005	224	1	0	0	0	1	0	copy fasta	FAM236D	chrX	72802425	72813210
FAM237A_chr2_206637487_206654365	1/0	t0001	678	405	88	54	209	13	40	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0002	678	23	0	18	0	3	2	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/1	t0003	678	17	3	8	1	2	2	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0004	679	6	6	0	0	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0005	678	3	0	3	0	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0006	678	2	0	0	2	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0007	678	2	0	0	2	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0008	678	2	0	0	2	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0009	678	1	0	0	1	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0010	678	1	1	0	0	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0011	678	1	0	0	1	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	t0012	678	1	0	1	0	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237B_chr7_90311807_90326304	0/1	t0001	2960	146	27	34	53	7	24	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0002	2960	142	38	20	68	3	13	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0003	2960	33	2	3	25	0	3	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0004	2960	27	0	3	23	0	1	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	1/0	t0005	2956	15	1	9	0	3	1	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0006	2960	5	0	0	5	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0007	2960	4	3	1	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0008	2961	3	3	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0009	2960	3	3	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0010	2960	3	0	3	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0011	2961	2	2	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0012	2960	2	2	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0013	2960	2	0	0	1	0	1	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0014	2960	2	2	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0015	2960	2	2	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0016	2960	2	2	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0017	2960	2	2	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0018	2961	1	1	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0019	2960	1	1	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0020	2960	1	0	0	1	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0021	2960	1	0	0	1	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0022	2960	1	0	1	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0023	2960	1	0	0	0	0	1	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0024	2960	1	0	0	0	0	1	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0025	2960	1	0	0	1	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0026	2960	1	1	0	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0027	3296	1	0	1	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0028	3295	1	0	0	0	0	1	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0029	3294	1	0	1	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	t0030	3293	1	0	0	0	1	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM240A_chr3_46607525_46631543	0/0	t0001	1487	126	25	29	51	7	14	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/1	t0002	1487	120	17	28	58	2	14	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0003	1487	51	4	1	44	0	2	copy fasta	FAM240A	chr3	46607525	46631543