JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM240A_chr3_46607525_46631543	0/0	t0004	1487	38	27	5	3	0	3	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0005	1487	19	9	1	5	1	3	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0006	1487	17	0	5	12	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0007	1487	12	2	0	10	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0008	1487	10	0	4	3	1	2	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0009	1487	7	2	1	2	0	2	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0010	1487	6	0	0	6	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	1/0	t0011	1485	6	5	0	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0012	1487	3	0	0	3	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0013	1485	3	0	1	0	1	1	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0014	1487	3	3	0	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0015	1487	2	0	2	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0016	1487	2	2	0	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0017	1487	2	0	0	2	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0018	1487	1	0	0	1	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0019	1487	1	0	0	0	0	1	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0020	1487	1	0	0	1	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0021	1487	1	0	1	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0022	1487	1	0	0	0	1	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0023	1487	1	0	0	0	1	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0024	1487	1	0	0	1	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0025	1487	1	0	0	1	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0026	1487	1	0	0	1	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0027	1487	1	1	0	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	t0028	1487	1	1	0	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240B_chr9_38689266_38725133	1/1	t0001	626	230	49	36	116	8	19	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	t0002	631	119	27	28	40	5	19	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	t0003	625	68	5	7	48	2	6	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	t0004	630	34	2	8	19	3	2	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	t0005	631	5	5	0	0	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	t0006	631	4	4	0	0	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	t0007	626	2	1	0	0	0	1	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	t0008	631	2	0	1	0	0	1	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	t0009	631	1	1	0	0	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	t0010	626	1	0	0	1	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240C_chr2_241888988_241905464	0/1	t0001	321	34	10	9	4	6	4	copy fasta	FAM240C	chr2	241888988	241905464
FAM240C_chr2_241888988_241905464	0/0	t0002	321	2	2	0	0	0	0	copy fasta	FAM240C	chr2	241888988	241905464
FAM240C_chr2_241888988_241905464	0/0	t0003	321	1	0	1	0	0	0	copy fasta	FAM240C	chr2	241888988	241905464
FAM241A_chr4_112140454_112200256	0/0	t0001	8446	43	2	18	14	3	6	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0002	8434	31	0	2	29	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0003	8443	23	0	4	14	1	4	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0004	8448	20	0	0	20	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0005	8445	19	6	4	3	1	5	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0006	8448	16	1	2	12	0	1	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0007	8434	16	2	0	14	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0008	8444	14	6	3	1	2	2	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0009	8446	13	0	2	8	1	2	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0010	8446	9	8	1	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0011	8445	8	7	1	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0012	8443	6	4	1	0	0	1	copy fasta	FAM241A	chr4	112140454	112200256