JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM241A_chr4_112140454_112200256	0/0	t0013	8447	5	1	1	1	0	2	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0014	8447	5	2	0	0	3	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0015	8443	5	4	1	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0016	8445	4	0	1	3	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0017	8447	4	0	0	3	0	1	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	1/0	t0018	8446	4	3	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0019	8467	4	3	1	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0020	8466	4	4	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0021	8465	4	3	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0022	8448	4	0	0	4	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0023	8446	3	0	0	3	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0024	8447	3	0	1	1	1	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0025	8446	3	3	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0026	8446	3	0	1	1	0	1	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0027	8465	3	0	1	0	0	2	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0028	8465	3	0	0	3	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0029	8445	3	0	0	1	0	2	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/1	t0030	8448	2	0	1	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0031	8445	2	0	1	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0032	8444	2	2	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0033	8444	2	2	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0034	8449	2	0	0	2	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0035	8445	2	2	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0036	8445	2	1	1	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0037	8444	2	2	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0038	8444	2	2	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0039	8435	2	0	0	2	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0040	8466	2	2	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0041	8447	2	0	0	2	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0042	8431	2	2	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0043	8446	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0044	8445	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0045	8445	1	0	0	0	0	1	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0046	8445	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0047	8446	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0048	8444	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0049	8449	1	0	1	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0050	8447	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0051	8446	1	0	1	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0052	8446	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0053	8446	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0054	8446	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0055	8446	1	0	0	0	0	1	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0056	8444	1	0	0	0	1	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0057	8444	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0058	8447	1	0	0	0	0	1	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0059	8448	1	0	0	0	0	1	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0060	8446	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0061	8444	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0062	8443	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256