JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM241A_chr4_112140454_112200256	0/0	t0113	8445	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0114	8446	1	0	0	0	0	1	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0115	8445	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0116	8446	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0117	8449	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0118	8449	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0119	8443	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0120	8466	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0121	8466	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	t0122	8432	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241B_chr10_69625247_69638596	0/0	t0001	708	311	49	47	184	11	20	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	1/1	t0002	708	114	38	25	23	5	21	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	t0003	708	30	4	10	5	2	9	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	t0004	708	2	2	0	0	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	t0005	708	1	1	0	0	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	t0006	708	1	1	0	0	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	t0007	708	1	1	0	0	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	t0008	708	1	0	0	1	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	t0009	708	1	0	0	1	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM24A_chr10_122905610_122918111	0/0	t0001	370	194	39	37	80	12	26	copy fasta	FAM24A	chr10	122905610	122918111
FAM24A_chr10_122905610_122918111	1/1	t0002	370	179	48	31	78	2	18	copy fasta	FAM24A	chr10	122905610	122918111
FAM24A_chr10_122905610_122918111	0/0	t0003	370	51	0	8	37	2	4	copy fasta	FAM24A	chr10	122905610	122918111
FAM24A_chr10_122905610_122918111	0/0	t0004	370	1	1	0	0	0	0	copy fasta	FAM24A	chr10	122905610	122918111
FAM24A_chr10_122905610_122918111	0/0	t0005	370	1	0	0	1	0	0	copy fasta	FAM24A	chr10	122905610	122918111
FAM24B_chr10_122844078_122884581	1/1	t0001	444	358	81	73	147	12	43	copy fasta	FAM24B	chr10	122844078	122884581
FAM24B_chr10_122844078_122884581	0/0	t0002	444	3	3	0	0	0	0	copy fasta	FAM24B	chr10	122844078	122884581
FAM24B_chr10_122844078_122884581	0/0	t0003	444	2	0	0	1	0	1	copy fasta	FAM24B	chr10	122844078	122884581
FAM24B_chr10_122844078_122884581	0/0	t0004	444	1	0	1	0	0	0	copy fasta	FAM24B	chr10	122844078	122884581
FAM25A_chr10_87015294_87029730	0/0	t0001	88	283	63	45	141	7	27	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	1/1	t0002	88	158	33	37	54	9	23	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	t0003	88	2	0	0	2	0	0	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	t0004	88	1	0	0	1	0	0	copy fasta	FAM25A	chr10	87015294	87029730
FAM25C_chr10_47990322_48004791	0/0	t0001	83	436	90	72	214	18	42	copy fasta	FAM25C	chr10	47990322	48004791
FAM25G_chr10_47482219_47496700	0/0	t0001	83	375	46	62	208	18	41	copy fasta	FAM25G	chr10	47482219	47496700
FAM25G_chr10_47482219_47496700	0/0	t0002	83	36	30	5	0	0	1	copy fasta	FAM25G	chr10	47482219	47496700
FAM25G_chr10_47482219_47496700	0/0	t0003	83	9	8	1	0	0	0	copy fasta	FAM25G	chr10	47482219	47496700
FAM25G_chr10_47482219_47496700	0/0	t0004	81	4	2	2	0	0	0	copy fasta	FAM25G	chr10	47482219	47496700
FAM32A_chr19_16180410_16197046	1/1	t0001	1125	332	80	53	144	18	35	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0002	1125	56	0	14	37	0	5	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0003	1125	5	3	2	0	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0004	1125	5	5	0	0	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0005	1123	4	2	2	0	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0006	1125	2	2	0	0	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0007	1125	1	1	0	0	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0008	1125	1	0	0	1	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0009	1125	1	1	0	0	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0010	1125	1	1	0	0	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0011	1125	1	0	0	0	0	1	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0012	1125	1	0	1	0	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	t0013	1125	1	0	0	0	0	1	copy fasta	FAM32A	chr19	16180410	16197046