JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM32A_chr19_16180410_16197046	0/0	t0014	1125	1	1	0	0	0	0	copy fasta	FAM32A	chr19	16180410	16197046
FAM3A_chrX_154501171_154521232	0/1	t0001	1101	194	4	35	123	12	19	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	1/0	t0002	1101	89	39	16	17	1	15	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0003	1101	16	14	1	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0004	1101	10	10	0	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0005	1101	9	8	1	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0006	1101	5	0	5	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0007	1101	2	0	0	2	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0008	1101	2	0	1	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0009	1101	1	1	0	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0010	1101	1	0	0	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0011	1101	1	1	0	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0012	1101	1	1	0	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0013	1101	1	1	0	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0014	1101	1	0	0	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0015	1101	1	1	0	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0016	1103	1	0	0	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0017	1101	1	0	1	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0018	1101	1	0	1	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0019	1101	1	0	1	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	t0020	1101	1	0	0	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3B_chr21_41311801_41362727	1/1	t0001	610	241	39	58	100	11	31	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	t0002	610	65	44	8	5	3	5	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	t0003	610	3	3	0	0	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	t0004	610	2	2	0	0	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	t0005	610	1	1	0	0	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	t0006	610	1	0	0	1	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	t0007	610	1	1	0	0	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3C_chr7_121343878_121401308	0/1	t0001	1772	186	39	45	73	10	18	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0002	1772	22	19	2	0	0	1	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0003	1772	20	12	0	4	0	4	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0004	1772	18	1	13	0	3	1	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0005	1772	7	7	0	0	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0006	1772	3	0	0	3	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0007	1772	2	0	2	0	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0008	1772	2	2	0	0	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0009	1772	1	0	0	0	1	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0010	1772	1	0	0	1	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0011	1772	1	0	0	0	0	1	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0012	1772	1	0	0	0	0	1	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0013	1772	1	0	0	1	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0014	1772	1	0	1	0	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0015	1772	1	1	0	0	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0016	1772	1	1	0	0	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	0/0	t0017	1772	1	0	1	0	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3C_chr7_121343878_121401308	1/0	t0018	1772	1	0	0	0	0	0	copy fasta	FAM3C	chr7	121343878	121401308
FAM3D_chr3_58628946_58671774	1/1	t0001	571	372	77	71	158	14	50	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	t0002	571	12	11	1	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	t0003	571	6	0	0	6	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	t0004	571	4	3	1	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774