Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AK3_chr9_4704556_4746202	1/0	t0039	3536	1	0	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0040	3535	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0041	3537	1	0	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0042	3535	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0043	3533	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0044	3529	1	0	0	0	0	1	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0045	3536	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0046	3534	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0047	3535	1	0	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0048	3537	1	0	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0049	3536	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0050	3536	1	0	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0051	3536	1	0	0	0	1	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0052	3536	1	0	0	0	0	1	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0053	3535	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0054	3536	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0055	3536	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0056	3536	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0057	3533	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0058	3509	1	0	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0059	3509	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0060	3535	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0061	3535	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0062	3533	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0063	3533	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0064	3533	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0065	3537	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0066	3533	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0067	3535	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0068	3536	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0069	3536	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0070	3534	1	0	0	0	1	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0071	3536	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0072	3535	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0073	3536	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0074	3533	1	0	0	0	0	1	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0075	3535	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0076	3535	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0077	3536	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0078	3537	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	t0079	3534	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK4_chr1_65143203_65237145	1/1	t0001	6174	59	2	13	35	3	4	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0002	6174	47	7	4	32	2	2	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0003	6174	32	8	2	19	0	3	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0004	6175	16	6	9	0	0	1	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0005	6173	14	0	9	5	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0006	6173	8	7	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0007	6175	7	2	1	3	0	1	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0008	6175	7	0	1	5	0	1	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0009	6164	5	5	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145