JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM3D_chr3_58628946_58671774	0/0	t0005	571	2	2	0	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	t0006	571	1	1	0	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	t0007	571	1	0	1	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM43A_chr3_194680883_194694037	0/1	t0001	1885	128	2	26	83	1	15	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0002	1885	121	26	22	54	4	15	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	1/0	t0003	1884	107	15	27	51	3	10	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0004	1885	22	16	5	0	1	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0005	1885	17	11	0	1	0	5	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0006	1884	6	3	1	1	0	1	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0007	1884	5	4	1	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0008	1886	4	4	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0009	1885	4	4	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0010	1884	3	0	1	2	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0011	1885	3	3	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0012	1885	2	0	2	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0013	1885	2	0	0	2	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0014	1886	2	2	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0015	1885	2	2	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0016	1884	2	0	0	0	0	2	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0017	1885	1	0	0	0	0	1	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0018	1884	1	1	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0019	1885	1	0	0	0	0	1	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0020	1884	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0021	1884	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0022	1885	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0023	1886	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0024	1886	1	0	0	0	1	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0025	1885	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0026	1886	1	1	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0027	1886	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	t0028	1884	1	0	1	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43B_chr1_20547573_20560020	1/1	t0001	1459	285	54	59	123	15	32	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0002	1459	105	17	12	59	1	16	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0003	1460	50	15	8	25	1	1	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0004	1459	10	7	2	0	0	1	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0005	1459	3	3	0	0	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0006	1459	3	0	0	3	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0007	1459	2	0	0	2	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0008	1459	2	0	0	2	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0009	1459	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0010	1459	1	0	1	0	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0011	1459	1	0	0	0	1	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	t0012	1459	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM47A_chrX_34124752_34137314	1/1	t0001	188	324	78	55	148	13	28	copy fasta	FAM47A	chrX	34124752	34137314
FAM47B_chrX_34937796_34949915	0/0	t0001	183	175	23	24	105	3	20	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	1/1	t0002	183	155	52	29	51	10	11	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	t0003	183	1	0	1	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47C_chrX_37003366_37016664	1/1	t0001	192	304	69	59	131	13	30	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	t0002	192	3	3	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	t0003	192	1	0	0	1	0	0	copy fasta	FAM47C	chrX	37003366	37016664