JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM47E_chr4_76246721_76288783	1/1	t0001	352	387	88	65	182	12	38	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	t0002	352	3	3	0	0	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	t0003	352	1	0	1	0	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	t0004	352	1	1	0	0	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM50A_chrX_154439141_154455654	1/1	t0001	318	220	53	41	93	6	25	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0002	318	29	4	15	5	1	4	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0003	331	14	14	0	0	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0004	309	2	0	2	0	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0005	299	2	1	1	0	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0006	320	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0007	319	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0008	324	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0009	321	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0010	317	1	0	1	0	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0011	315	1	1	0	0	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0012	327	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	t0013	296	1	1	0	0	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50B_chr6_3844373_3856317	1/0	t0001	666	259	37	44	139	9	29	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/1	t0002	666	124	32	25	45	7	14	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	t0003	666	93	23	12	54	2	2	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	t0004	666	2	2	0	0	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	t0005	666	1	0	0	0	0	1	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	t0006	666	1	0	1	0	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM53A_chr4_1634887_1689313	0/1	t0001	1652	92	8	21	48	2	12	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0002	1595	24	11	3	10	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0003	1595	22	1	4	12	0	5	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0004	1782	20	2	8	1	2	7	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	1/0	t0005	1652	18	0	3	12	0	2	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0006	1652	16	0	3	7	3	3	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0007	1652	16	0	13	0	0	3	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0008	1652	14	0	4	7	0	3	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0009	1595	13	12	1	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0010	1652	11	0	0	11	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0011	1652	7	6	1	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0012	1652	6	6	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0013	1652	6	0	0	6	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0014	1652	5	0	3	0	1	1	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0015	1782	5	0	3	0	0	2	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0016	1652	5	5	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0017	1782	5	2	0	0	2	1	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0018	1595	4	1	2	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0019	1652	4	4	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0020	1595	4	2	2	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0021	1652	3	0	0	3	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0022	1595	3	3	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0023	1714	2	0	0	2	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0024	1714	2	1	1	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0025	1595	2	2	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0026	1656	2	2	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0027	1471	2	2	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313