JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM53A_chr4_1634887_1689313	0/0	t0028	1652	2	2	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0029	1652	2	0	0	2	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0030	1533	2	2	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0031	1594	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0032	1595	1	0	1	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0033	1652	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0034	1652	1	0	1	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0035	1652	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0036	1782	1	0	0	0	0	1	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0037	1535	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0038	1715	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0039	1595	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0040	1656	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0041	1595	1	0	1	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0042	1652	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0043	1590	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0044	1595	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0045	1596	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0046	1594	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0047	1594	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0048	1652	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0049	1595	1	0	0	0	0	1	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0050	1720	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0051	1652	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0052	1590	1	0	1	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0053	1652	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0054	1652	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0055	1652	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0056	1714	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0057	1714	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0058	1652	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0059	1782	1	0	0	0	0	1	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0060	1658	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	t0061	1715	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53B_chr10_124614292_124749378	1/1	t0001	4491	96	16	22	36	8	12	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0002	4491	21	0	0	21	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0003	4492	18	1	1	12	1	3	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0004	4491	11	11	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0005	4504	9	0	0	7	1	1	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0006	4491	9	9	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0007	4491	8	0	0	8	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0008	4495	7	0	0	7	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0009	4491	7	0	3	0	1	3	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0010	4491	6	4	0	0	0	2	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0011	4490	6	1	0	4	0	1	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0012	4491	5	5	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0013	4492	5	0	0	5	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0014	4496	4	0	4	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0015	4493	4	4	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0016	4491	4	0	3	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378