JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM53B_chr10_124614292_124749378	0/0	t0067	4491	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0068	4491	1	0	1	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0069	4491	1	0	1	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0070	4492	1	0	1	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0071	4491	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0072	4491	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0073	4493	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0074	4495	1	0	0	0	0	1	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0075	4493	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0076	4491	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0077	4491	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0078	4491	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0079	4491	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0080	4491	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0081	4492	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0082	4491	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0083	4492	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0084	4490	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0085	4492	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0086	4491	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0087	4491	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0088	4490	1	0	0	0	0	1	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0089	4481	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0090	4493	1	0	1	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	t0091	4491	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53C_chr5_138333266_138354729	0/0	t0001	2967	137	19	14	91	3	10	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/1	t0002	2967	123	5	33	66	4	14	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0003	2965	90	26	23	27	4	10	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0004	2967	27	4	8	6	2	7	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0005	2967	16	15	1	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	1/0	t0006	2965	9	8	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0007	2967	5	1	1	0	2	1	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0008	2967	2	0	0	2	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0009	2967	2	2	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0010	2967	2	0	0	0	0	2	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0011	2967	2	2	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0012	2967	1	0	0	1	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0013	2967	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0014	2967	1	0	0	1	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0015	2967	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0016	2967	1	0	0	1	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0017	2967	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0018	2967	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0019	2967	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0020	2967	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0021	2965	1	0	0	0	1	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0022	2965	1	0	1	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0023	2965	1	0	0	1	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0024	2967	1	0	0	0	0	1	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0025	2815	1	0	1	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729