JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM53C_chr5_138333266_138354729	0/0	t0026	2967	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0027	2967	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	t0028	2967	1	0	0	0	0	1	copy fasta	FAM53C	chr5	138333266	138354729
FAM72A_chr1_206181179_206207839	1/1	t0001	1915	268	66	55	102	9	34	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0002	1915	18	0	0	18	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0003	1915	8	0	0	8	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0004	1915	7	6	1	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0005	1916	5	0	1	0	0	4	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0006	1915	5	5	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0007	1915	4	3	1	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0008	1915	4	4	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0009	1915	4	0	1	2	0	1	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0010	1915	3	0	1	2	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0011	1915	2	0	1	0	1	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0012	1915	2	1	1	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0013	1915	2	2	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0014	1915	2	2	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0015	1915	2	2	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0016	1915	1	1	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0017	1915	1	1	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0018	1915	1	0	0	1	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0019	1916	1	1	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0020	1915	1	0	0	0	0	1	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0021	1915	1	0	0	1	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0022	1915	1	0	0	1	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0023	1888	1	0	0	1	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0024	1915	1	1	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72A_chr1_206181179_206207839	0/0	t0025	1915	1	1	0	0	0	0	copy fasta	FAM72A	chr1	206181179	206207839
FAM72B_chr1_121162646_121189340	1/1	t0001	1947	322	60	63	139	17	41	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0002	1947	12	1	4	4	0	3	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0003	1947	11	11	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0004	1947	10	1	0	8	0	1	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0005	1947	8	7	1	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0006	1947	3	3	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0007	1947	2	0	0	0	0	2	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0008	1947	2	2	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0009	1947	1	0	0	0	0	1	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0010	1947	1	1	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0011	1947	1	0	1	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0012	1947	1	1	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0013	1947	1	1	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0014	1947	1	0	1	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0015	1947	1	0	0	0	1	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0016	1920	1	1	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0017	1947	1	1	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	t0018	1960	1	0	0	1	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72C_chr1_143950287_143976986	0/0	t0001	1946	161	37	40	62	6	16	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0002	1946	40	2	7	24	3	4	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0003	1945	7	7	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0004	1945	7	0	2	5	0	0	copy fasta	FAM72C	chr1	143950287	143976986