JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM72C_chr1_143950287_143976986	0/0	t0005	1946	5	5	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0006	1946	4	4	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0007	1946	4	4	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0008	1946	3	3	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0009	1946	2	2	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0010	1946	2	0	0	2	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0011	1946	1	0	0	0	1	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0012	1946	1	0	0	1	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0013	1946	1	0	1	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0014	1946	1	0	0	0	0	1	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0015	1946	1	0	0	1	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0016	1946	1	0	0	1	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0017	1946	1	1	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0018	1946	1	1	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0019	1946	1	0	0	0	0	1	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0020	1946	1	1	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0021	1946	1	0	0	1	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0022	1918	1	0	0	1	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	t0023	1946	1	1	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72D_chr1_145090974_145117696	0/0	t0001	1974	222	22	61	101	11	27	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0002	1974	23	21	2	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0003	1974	15	0	0	15	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0004	1974	11	0	4	3	3	1	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0005	1974	6	6	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0006	1974	6	3	0	0	0	3	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0007	1974	4	0	0	4	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0008	1947	4	0	0	4	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0009	1975	3	0	0	3	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0010	1974	3	3	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0011	1974	2	2	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0012	1974	2	0	0	2	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0013	1974	2	2	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0014	1974	1	0	0	0	0	1	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0015	1974	1	0	0	1	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0016	1974	1	1	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0017	1975	1	0	0	1	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0018	1974	1	0	0	0	0	1	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0019	1974	1	0	0	0	0	1	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0020	1974	1	1	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0021	1974	1	1	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0022	1974	1	0	1	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0023	1974	1	0	0	1	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0024	1974	1	1	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0025	1974	1	1	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0026	1975	1	0	0	1	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0027	1974	1	0	0	1	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0028	1974	1	0	0	1	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0029	1975	1	1	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	t0030	1974	1	1	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM76A_chr1_27720961_27768116	0/1	t0001	2655	118	25	26	50	2	14	copy fasta	FAM76A	chr1	27720961	27768116