JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM76A_chr1_27720961_27768116	0/0	t0002	2658	45	9	1	29	0	6	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0003	2656	12	10	2	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0004	2659	11	8	3	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0005	2656	9	4	1	4	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0006	2656	8	0	1	7	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0007	2654	6	1	0	1	2	2	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0008	2658	5	5	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0009	2657	4	3	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0010	2657	4	2	0	1	0	1	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0011	2655	3	0	0	0	0	3	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0012	2658	3	3	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0013	2659	3	1	0	2	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0014	2655	2	0	0	2	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	1/0	t0015	2656	2	0	1	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0016	2660	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0017	2657	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0018	2658	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0019	2657	1	0	1	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0020	2657	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0021	2658	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0022	2657	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0023	2657	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0024	2657	1	0	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0025	2655	1	0	0	0	0	1	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0026	2659	1	0	1	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0027	2659	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0028	2656	1	0	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0029	2655	1	0	0	0	0	1	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0030	2658	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0031	2658	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0032	2655	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0033	2655	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0034	2659	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0035	2658	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0036	2658	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0037	2656	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0038	2660	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0039	2659	1	0	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0040	2660	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0041	2656	1	0	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0042	2657	1	0	1	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0043	2658	1	0	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	t0044	2658	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76B_chr11_95763953_95794782	1/0	t0001	2913	276	77	53	114	6	25	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0002	2913	88	6	15	52	8	7	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0003	2910	15	7	1	0	0	7	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/1	t0004	2913	7	0	0	0	0	6	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0005	2913	3	3	0	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0006	2913	3	0	3	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0007	2913	3	0	0	3	0	0	copy fasta	FAM76B	chr11	95763953	95794782