JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM76B_chr11_95763953_95794782	0/0	t0008	2913	3	2	0	1	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0009	2913	2	0	0	2	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0010	2913	2	0	2	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0011	2913	1	1	0	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0012	2913	1	1	0	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0013	2913	1	0	1	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0014	2913	1	0	1	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0015	2913	1	0	0	1	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0016	2913	1	1	0	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0017	2913	1	0	0	1	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0018	2913	1	1	0	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0019	2913	1	0	0	1	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0020	2934	1	0	0	1	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0021	2913	1	0	0	0	0	1	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0022	2913	1	0	0	1	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0023	2913	1	1	0	0	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM76B_chr11_95763953_95794782	0/0	t0024	2913	1	0	0	1	0	0	copy fasta	FAM76B	chr11	95763953	95794782
FAM78A_chr9_131253078_131281510	0/1	t0001	3077	196	36	43	86	5	25	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0002	3077	134	10	25	72	9	18	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	1/0	t0003	3076	16	15	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0004	3077	10	5	0	4	0	1	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0005	3076	5	5	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0006	3077	4	0	0	4	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0007	3076	4	1	0	1	0	2	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0008	3076	4	0	4	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0009	3076	3	0	1	0	0	2	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0010	3077	3	0	1	0	2	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0011	3077	3	3	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0012	3077	3	3	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0013	3077	3	3	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0014	3077	2	0	0	2	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0015	3077	2	2	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0016	3077	2	2	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0017	3077	2	1	1	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0018	3077	2	2	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0019	3077	2	1	1	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0020	3077	1	1	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0021	3092	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0022	3077	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0023	3077	1	0	1	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0024	3077	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0025	3077	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0026	3077	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0027	3077	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0028	3077	1	1	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0029	3077	1	1	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0030	3076	1	1	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0031	3077	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0032	3077	1	0	0	0	0	1	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0033	3077	1	0	0	0	0	1	copy fasta	FAM78A	chr9	131253078	131281510