JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM78A_chr9_131253078_131281510	0/0	t0034	3077	1	1	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0035	3077	1	0	1	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0036	3076	1	1	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	t0037	3076	1	1	0	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78B_chr1_166064299_166172001	1/0	t0001	1696	137	35	20	68	2	11	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/1	t0002	1696	61	9	18	24	2	7	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0003	1696	49	1	14	26	1	7	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0004	1696	17	16	1	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0005	1696	16	0	9	7	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0006	1696	8	0	4	0	3	1	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0007	1696	5	5	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0008	1696	3	3	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0009	1696	3	3	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0010	1696	3	2	0	0	0	1	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0011	1696	2	2	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0012	1696	1	0	0	1	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0013	1696	1	1	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0014	1696	1	1	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0015	1696	1	1	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0016	1696	1	0	0	1	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0017	1696	1	1	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0018	1696	1	1	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0019	1696	1	0	1	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0020	1696	1	0	0	1	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0021	1696	1	0	0	0	0	1	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0022	1696	1	1	0	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0023	1696	1	0	0	1	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0024	1696	1	0	0	1	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM78B_chr1_166064299_166172001	0/0	t0025	1696	1	0	1	0	0	0	copy fasta	FAM78B	chr1	166064299	166172001
FAM81A_chr15_59433186_59528555	1/1	t0001	2352	326	57	64	154	11	38	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0002	2352	7	7	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0003	2352	7	7	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0004	2352	6	1	1	1	2	1	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0005	2352	6	6	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0006	2352	3	0	0	3	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0007	2352	3	3	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0008	2352	2	0	0	2	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0009	2352	2	0	1	0	1	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0010	2352	2	2	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0011	2352	2	2	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0012	2352	1	1	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0013	2352	1	1	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0014	2352	1	1	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0015	2352	1	1	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0016	2366	1	0	0	1	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0017	2352	1	0	0	0	0	1	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0018	2352	1	0	0	1	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	t0019	2352	1	1	0	0	0	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81B_chr5_95386366_95455441	1/0	t0001	184	260	47	62	106	11	33	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/1	t0002	184	88	43	14	20	1	9	copy fasta	FAM81B	chr5	95386366	95455441