JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AK4_chr1_65143203_65237145	0/0	t0010	6173	5	0	0	5	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0011	6174	4	4	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0012	6173	4	3	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0013	6173	4	0	0	4	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0014	6175	3	2	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0015	6172	3	3	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0016	6174	3	3	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0017	6174	3	0	0	0	0	3	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0018	6174	3	0	0	3	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0019	6174	2	2	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0020	6174	2	2	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0021	6175	2	0	0	0	2	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0022	6174	2	0	0	2	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0023	6174	2	0	0	2	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0024	6173	2	0	0	2	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0025	6175	2	1	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0026	6174	2	0	0	0	2	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0027	6174	2	1	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0028	6174	2	0	2	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0029	6173	2	0	0	2	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0030	6174	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0031	6174	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0032	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0033	6175	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0034	6175	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0035	6174	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0036	6175	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0037	6174	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0038	6174	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0039	6174	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0040	6174	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0041	6174	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0042	6174	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0043	6173	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0044	6173	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0045	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0046	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0047	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0048	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0049	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0050	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0051	6173	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0052	6174	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0053	6172	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0054	6174	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0055	6171	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0056	6166	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0057	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0058	6176	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0059	6173	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145