JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM83A_chr8_123177665_123215078	1/1	t0001	2583	238	39	50	105	4	38	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0002	2583	56	2	7	36	6	5	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0003	2583	27	18	6	0	1	2	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0004	2583	18	15	3	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0005	2583	5	2	3	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0006	2583	5	5	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0007	2576	3	0	0	3	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0008	2583	2	0	0	0	2	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0009	2583	2	2	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0010	2583	1	0	1	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0011	2583	1	1	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0012	2583	1	1	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0013	2583	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0014	2583	1	0	0	0	1	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0015	2583	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0016	2583	1	0	0	0	0	1	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0017	2583	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0018	2583	1	1	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0019	2583	1	1	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0020	2583	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0021	2583	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0022	2583	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	t0023	2583	1	1	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83B_chr6_54841771_54950099	0/0	t0001	3209	69	1	12	41	2	13	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	1/1	t0002	3209	69	12	21	21	1	12	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0003	3210	29	17	6	1	1	4	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0004	3210	12	2	10	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0005	3209	11	1	0	9	0	1	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0006	3209	10	10	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0007	3209	10	10	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0008	3209	8	6	1	0	0	1	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0009	3209	6	2	2	0	2	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0010	3209	5	5	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0011	3344	5	2	3	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0012	3210	4	0	0	4	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0013	3370	3	3	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0014	3209	3	0	0	3	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0015	3209	2	0	0	0	0	2	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0016	3209	2	2	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0017	3209	2	2	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0018	3371	2	2	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0019	3376	2	2	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0020	3383	2	2	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0021	3209	2	0	0	2	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0022	3209	1	0	0	1	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0023	3209	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0024	3209	1	0	0	0	0	1	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0025	3209	1	0	0	1	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0026	3210	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0027	3209	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099