JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM83B_chr6_54841771_54950099	0/0	t0028	3209	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0029	3345	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0030	3358	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0031	3366	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0032	3380	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0033	3209	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0034	3210	1	0	0	1	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	t0035	3209	1	0	1	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83C_chr20_35280731_35297425	0/0	t0001	926	183	34	31	104	4	10	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0002	923	55	16	9	17	7	6	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0003	930	44	9	7	16	2	10	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0004	923	44	10	5	14	2	13	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0005	928	17	5	1	10	0	1	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0006	932	13	4	8	0	1	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	1/1	t0007	926	8	1	0	1	2	2	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0008	929	8	5	3	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0009	923	5	2	0	3	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0010	924	5	1	0	4	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0011	934	3	1	2	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0012	928	2	0	2	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0013	923	2	0	0	2	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0014	926	1	0	1	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0015	933	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0016	929	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0017	926	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0018	926	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0019	926	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0020	923	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0021	926	1	0	1	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	t0022	923	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83D_chr20_38921417_38958106	1/0	t0001	613	181	37	32	90	3	18	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/1	t0002	613	99	14	23	52	2	7	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	t0003	613	32	12	2	14	1	3	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	t0004	613	22	21	1	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	t0005	613	2	2	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	t0006	613	2	2	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	t0007	613	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	t0008	613	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	t0009	613	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	t0010	613	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83E_chr19_48594961_48620076	0/0	t0001	2676	57	4	6	46	0	1	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0002	2676	51	4	17	28	0	2	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0003	2676	51	7	7	27	2	8	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0004	2676	33	2	18	0	3	10	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0005	2676	32	0	0	25	0	7	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/1	t0006	2676	31	7	6	13	1	3	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0007	2676	11	10	1	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0008	2676	11	4	4	0	1	2	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0009	2676	9	7	0	2	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0010	2676	8	1	1	6	0	0	copy fasta	FAM83E	chr19	48594961	48620076