JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM83E_chr19_48594961_48620076	0/0	t0061	2676	1	0	0	0	1	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0062	2677	1	0	0	0	0	1	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	1/0	t0063	2676	1	0	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0064	2676	1	0	0	0	1	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0065	2677	1	1	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0066	2676	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0067	2676	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0068	2651	1	0	0	0	0	1	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0069	2676	1	1	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	t0070	2676	1	1	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83F_chr22_39989954_40048534	0/0	t0001	14059	28	12	6	2	1	7	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	1/0	t0002	14059	23	1	6	7	1	7	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0003	14059	22	2	7	8	1	4	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0004	14059	16	0	7	5	1	3	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0005	14060	8	0	3	3	0	2	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0006	14059	7	6	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0007	14059	6	1	2	1	0	2	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0008	14071	5	4	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0009	14057	5	5	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0010	14059	5	0	3	0	0	2	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0011	14059	5	0	0	0	0	5	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0012	14071	4	4	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0013	14059	4	0	0	3	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0014	14059	4	0	0	3	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0015	14071	2	2	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0016	14059	2	0	1	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0017	14059	2	2	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0018	14059	2	0	0	0	1	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0019	14067	2	2	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0020	14059	2	2	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0021	14059	2	0	2	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0022	14059	2	0	1	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0023	14059	2	1	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0024	14060	2	0	0	2	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0025	14067	2	1	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0026	14058	2	0	0	0	2	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0027	14067	2	2	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0028	14059	2	0	2	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0029	14059	2	2	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0030	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0031	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0032	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0033	14071	1	0	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0034	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0035	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0036	14071	1	0	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0037	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0038	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0039	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0040	14079	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534