JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM83F_chr22_39989954_40048534	0/0	t0041	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0042	14071	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0043	14057	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0044	14057	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0045	14042	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0046	14042	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0047	14042	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0048	14067	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0049	14059	1	0	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0050	14060	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/1	t0051	14059	1	0	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0052	14059	1	0	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0053	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0054	14059	1	0	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0055	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0056	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0057	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0058	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0059	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0060	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0061	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0062	14059	1	0	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0063	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0064	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0065	14059	1	0	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0066	14059	1	0	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0067	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0068	14059	1	0	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0069	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0070	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0071	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0072	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0073	14059	1	0	0	0	1	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0074	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0075	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0076	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0077	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0078	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0079	14059	1	0	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0080	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0081	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0082	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0083	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0084	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0085	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0086	14057	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0087	14057	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0088	14060	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0089	14059	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	t0090	14059	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534