JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM83F_chr22_39989954_40048534	0/0	t0091	14059	1	0	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83G_chr17_18963789_19009764	0/0	t0001	2755	174	26	33	86	6	23	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	1/0	t0002	2755	112	28	21	50	4	8	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0003	2755	38	6	5	14	4	9	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0004	2752	10	9	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0005	2755	6	0	0	5	0	1	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0006	2755	5	4	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0007	2755	4	4	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0008	2755	3	0	0	3	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/1	t0009	2755	3	2	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0010	2755	3	2	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0011	2755	2	0	1	0	0	1	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0012	2755	2	2	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0013	2755	1	1	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0014	2755	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0015	2755	1	0	0	0	0	1	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0016	2755	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0017	2755	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0018	2755	1	0	0	0	0	1	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0019	2755	1	0	0	0	0	1	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0020	2755	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0021	2755	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0022	2741	1	0	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0023	2755	1	0	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0024	2755	1	1	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0025	2755	1	0	0	0	0	1	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0026	2755	1	0	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0027	2755	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	t0028	2755	1	1	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83H_chr8_143718933_143738779	0/0	t0001	2084	59	3	10	41	1	4	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0002	2093	34	4	7	14	2	7	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0003	2091	34	1	11	14	0	8	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0004	2092	32	1	8	16	2	5	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/1	t0005	2095	23	1	5	11	2	3	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0006	2094	21	0	6	6	1	8	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0007	2086	19	2	0	15	0	2	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0008	2085	18	0	1	12	1	4	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0009	2091	14	14	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0010	2084	10	2	5	0	2	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0011	2084	9	0	0	9	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0012	2091	7	7	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0013	2090	5	0	1	2	2	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0014	2090	4	3	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0015	2093	4	4	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0016	2092	4	4	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0017	2092	4	1	1	2	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0018	2093	3	3	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0019	2091	3	3	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0020	2093	3	0	0	0	0	3	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0021	2093	3	3	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779