JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM83H_chr8_143718933_143738779	0/0	t0022	2093	3	3	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0023	2091	3	3	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0024	2090	3	2	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0025	2095	3	1	0	2	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0026	2092	3	0	0	2	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0027	2094	2	1	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0028	2091	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0029	2090	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0030	2092	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0031	2093	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0032	2094	2	0	1	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0033	2092	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0034	2090	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0035	2091	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0036	2094	2	0	0	2	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0037	2085	2	0	2	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0038	2095	2	0	0	2	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0039	2092	2	0	0	0	0	2	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0040	2092	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0041	2094	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0042	2093	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0043	2095	1	0	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0044	2095	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0045	2091	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0046	2091	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0047	2092	1	0	0	0	1	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0048	2090	1	0	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0049	2093	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0050	2094	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0051	2091	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0052	2092	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0053	2090	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0054	2091	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0055	2095	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0056	2095	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0057	2095	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0058	2093	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0059	2093	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0060	2092	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0061	2091	1	0	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0062	2091	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0063	2092	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0064	2083	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0065	2093	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0066	2094	1	0	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0067	2092	1	0	0	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0068	2093	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0069	2085	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0070	2092	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0071	2092	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779