JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM83H_chr8_143718933_143738779	0/0	t0072	2092	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0073	2084	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0074	2084	1	0	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0075	2085	1	0	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0076	2091	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0077	2091	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0078	2090	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0079	2094	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0080	2091	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0081	2092	1	0	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	t0082	2094	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM86B1_chr8_12177106_12199082	0/0	t0001	1409	86	3	26	49	4	4	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	1/1	t0002	1513	51	3	4	38	1	3	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0003	1409	15	6	6	2	0	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0004	1480	4	3	0	0	0	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0005	2461	2	0	2	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0006	1461	2	0	0	0	2	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0007	1513	2	0	0	0	1	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0008	1481	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0009	1480	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0010	1481	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0011	1480	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0012	1479	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0013	1409	1	0	0	1	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0014	1409	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0015	1409	1	0	0	0	0	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0016	1513	1	0	0	1	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0017	1513	1	0	0	1	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0018	1409	1	0	0	0	0	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0019	1409	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0020	1461	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	t0021	1481	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B2_chr8_12419421_12441400	0/0	t0001	1526	10	0	1	8	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0002	1454	7	4	1	1	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0003	1506	4	1	1	0	1	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0004	1422	3	3	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0005	1526	3	0	1	2	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0006	1454	3	3	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0007	1454	3	1	2	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0008	1525	2	0	0	1	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0009	1506	2	2	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0010	1526	2	0	0	0	1	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0011	1525	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0012	1526	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0013	1526	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0014	1525	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0015	1526	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0016	1455	1	0	0	0	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0017	1506	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0018	1455	1	0	1	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400