JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM86B2_chr8_12419421_12441400	0/0	t0019	1506	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0020	1474	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	t0021	1526	1	0	1	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM89A_chr1_231013958_231045254	0/1	t0001	950	241	28	35	146	6	25	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	t0002	951	181	49	36	63	12	21	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	1/0	t0003	949	14	13	0	0	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	t0004	949	4	3	1	0	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	t0005	951	2	0	0	2	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	t0006	950	2	0	2	0	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	t0007	951	2	0	2	0	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	t0008	950	1	1	0	0	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	t0009	950	1	0	0	1	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	t0010	950	1	0	0	1	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	t0011	951	1	0	0	1	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89B_chr11_65567538_65579190	0/0	t0001	682	307	81	61	121	16	28	copy fasta	FAM89B	chr11	65567538	65579190
FAM89B_chr11_65567538_65579190	0/0	t0002	682	43	9	4	19	0	11	copy fasta	FAM89B	chr11	65567538	65579190
FAM89B_chr11_65567538_65579190	0/0	t0003	682	6	0	0	6	0	0	copy fasta	FAM89B	chr11	65567538	65579190
FAM89B_chr11_65567538_65579190	0/0	t0004	682	4	4	0	0	0	0	copy fasta	FAM89B	chr11	65567538	65579190
FAM89B_chr11_65567538_65579190	0/0	t0005	682	2	0	0	2	0	0	copy fasta	FAM89B	chr11	65567538	65579190
FAM89B_chr11_65567538_65579190	0/0	t0006	682	2	0	1	0	0	1	copy fasta	FAM89B	chr11	65567538	65579190
FAM89B_chr11_65567538_65579190	0/0	t0007	682	1	1	0	0	0	0	copy fasta	FAM89B	chr11	65567538	65579190
FAM89B_chr11_65567538_65579190	0/0	t0008	682	1	1	0	0	0	0	copy fasta	FAM89B	chr11	65567538	65579190
FAM8A1_chr6_17595302_17616715	1/0	t0001	3485	192	35	31	90	8	27	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0002	3481	60	10	1	47	0	2	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0003	3481	38	2	14	15	5	2	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/1	t0004	3485	24	7	4	9	1	2	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0005	3485	9	5	1	0	1	2	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0006	3485	6	5	0	0	1	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0007	3485	5	0	0	5	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0008	3485	5	5	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0009	3485	3	0	0	0	0	3	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0010	3485	3	3	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0011	3485	2	2	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0012	3485	2	0	0	0	2	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0013	3481	2	1	1	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0014	3485	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0015	3485	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0016	3481	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0017	3481	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0018	3481	1	0	0	1	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0019	3485	1	0	1	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0020	3485	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0021	3485	1	0	0	0	0	1	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0022	3485	1	0	0	1	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0023	3485	1	0	0	1	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0024	3485	1	0	1	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0025	3485	1	0	0	0	0	1	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0026	3485	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0027	3481	1	0	0	1	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0028	3485	1	0	1	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715