JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM8A1_chr6_17595302_17616715	0/0	t0029	3485	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0030	3485	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0031	3481	1	0	1	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0032	3481	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0033	3481	1	0	0	1	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0034	3485	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0035	3485	1	1	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	t0036	3485	1	0	0	1	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM90A1_chr12_8216260_8232618	0/0	t0001	1122	51	3	9	30	3	6	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0002	1122	43	0	3	36	1	3	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0003	1121	25	0	4	18	0	3	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0004	1122	25	0	1	24	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0005	1121	24	0	1	21	1	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0006	1122	19	6	11	0	2	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0007	1122	18	3	6	5	3	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0008	1121	18	0	4	13	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0009	1122	13	0	0	12	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0010	1122	12	2	1	7	0	2	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/1	t0011	1122	11	0	1	4	0	5	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0012	1122	9	1	2	4	0	2	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0013	1122	7	2	4	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0014	1122	7	0	0	7	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0015	1122	7	2	3	0	1	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0016	1122	6	0	4	0	0	2	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0017	1121	6	0	0	6	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0018	1121	5	0	0	5	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0019	1122	5	1	3	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0020	1122	5	5	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0021	1122	4	2	0	0	0	2	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0022	1122	4	0	3	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0023	1122	3	0	0	3	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0024	1122	3	0	0	3	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0025	1121	3	0	0	3	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0026	1122	3	3	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0027	1122	3	3	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0028	1122	3	0	0	2	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0029	1122	3	3	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0030	1122	3	3	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0031	1122	3	3	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0032	1122	3	3	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0033	30583	2	0	2	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0034	1122	2	0	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0035	1121	2	0	0	0	0	2	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0036	1122	2	0	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0037	1122	2	0	0	0	1	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0038	1121	2	0	1	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0039	1121	2	0	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0040	1121	2	0	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0041	1121	2	0	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0042	1121	2	0	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618