Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AK4_chr1_65143203_65237145	0/0	t0060	6175	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0061	6175	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0062	6175	1	0	0	0	1	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0063	6174	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0064	6174	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0065	6174	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0066	6175	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0067	6175	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0068	6175	1	0	0	0	0	1	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0069	6175	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0070	6174	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0071	6174	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0072	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0073	6173	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0074	6172	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0075	6174	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0076	6172	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0077	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0078	6175	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0079	6172	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	t0080	6173	1	1	0	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK5_chr1_77277019_77564966	0/1	t0001	1588	92	14	18	49	7	3	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	1/0	t0002	1592	64	19	9	30	1	4	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0003	1588	35	2	1	29	2	1	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0004	1588	23	3	13	0	2	5	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0005	1592	10	0	1	8	0	1	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0006	1588	8	0	4	0	0	4	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0007	1595	6	5	0	0	0	1	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0008	1591	5	5	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0009	1592	5	5	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0010	1596	4	1	0	0	0	3	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0011	1593	4	3	0	0	0	1	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0012	1596	4	4	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0013	1592	3	3	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0014	1592	2	2	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0015	1592	2	1	0	0	0	1	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0016	1592	2	2	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0017	1588	2	0	0	2	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0018	1595	2	0	0	2	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0019	1588	2	0	0	2	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0020	1592	1	1	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0021	1588	1	0	0	1	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0022	1592	1	0	0	1	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0023	1588	1	0	0	1	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0024	1589	1	1	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0025	1589	1	1	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0026	1595	1	0	0	1	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0027	1592	1	0	0	1	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	t0028	1588	1	0	0	1	0	0	copy fasta	AK5	chr1	77277019	77564966
AK6_chr5_69345984_69374520	0/1	t0001	1108	389	74	71	195	14	34	copy fasta	AK6	chr5	69345984	69374520