JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
FAM90A1_chr12_8216260_8232618	0/0	t0043	1122	2	2	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0044	1122	2	2	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0045	1122	2	2	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0046	1122	2	2	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0047	1122	2	2	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0048	1122	2	1	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0049	1121	2	0	2	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	1/0	t0050	1122	2	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0051	30578	1	0	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0052	30566	1	0	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0053	30568	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0054	30568	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0055	30568	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0056	30568	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0057	30571	1	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0058	30569	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0059	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0060	1121	1	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0061	1122	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0062	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0063	1121	1	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0064	1121	1	0	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0065	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0066	1122	1	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0067	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0068	1121	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0069	1121	1	0	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0070	1121	1	0	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0071	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0072	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0073	1122	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0074	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0075	1121	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0076	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0077	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0078	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0079	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0080	1121	1	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0081	1121	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0082	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0083	1122	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0084	1122	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0085	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0086	1122	1	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0087	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0088	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0089	1121	1	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0090	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0091	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0092	1122	1	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618