JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM90A1_chr12_8216260_8232618	0/0	t0093	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0094	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0095	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0096	1122	1	0	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0097	1121	1	0	0	1	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0098	1122	1	0	0	0	1	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0099	1122	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0100	1121	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0101	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0102	1122	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0103	1121	1	0	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0104	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0105	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0106	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0107	1121	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0108	1121	1	0	0	0	0	1	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0109	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0110	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0111	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0112	1122	1	0	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0113	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0114	1121	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0115	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0116	1122	1	0	1	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0117	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0118	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0119	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0120	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0121	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0122	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0123	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0124	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0125	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM90A1_chr12_8216260_8232618	0/0	t0126	1122	1	1	0	0	0	0	copy fasta	FAM90A1	chr12	8216260	8232618
FAM91A1_chr8_123763439_123820452	0/1	t0001	3013	144	7	26	80	7	23	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0002	3013	81	27	9	37	2	6	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	1/0	t0003	3013	59	23	15	8	1	11	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0004	3013	12	0	0	11	0	1	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0005	3013	8	7	1	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0006	3013	4	4	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0007	3012	3	2	1	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0008	3013	3	3	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0009	3013	2	0	0	2	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0010	3012	2	1	0	1	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0011	3013	2	0	0	2	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0012	3013	2	2	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0013	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0014	3013	1	0	0	1	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0015	3013	1	0	0	1	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0016	3013	1	0	0	0	0	1	copy fasta	FAM91A1	chr8	123763439	123820452