JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM91A1_chr8_123763439_123820452	0/0	t0017	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0018	3012	1	0	1	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0019	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0020	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0021	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0022	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0023	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0024	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0025	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0026	3013	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0027	3013	1	0	0	1	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	t0028	3013	1	0	1	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM98A_chr2_33578660_33604299	0/1	t0001	1195	232	49	54	89	7	32	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	1/0	t0002	1195	123	8	17	80	6	11	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0003	1195	22	16	2	0	3	1	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0004	1195	15	15	0	0	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0005	1195	3	3	0	0	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0006	1195	3	0	0	3	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0007	1195	2	0	2	0	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0008	1195	1	1	0	0	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0009	1195	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0010	1195	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0011	1195	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0012	1195	1	0	1	0	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	t0013	1195	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98B_chr15_38449127_38492710	0/1	t0001	3087	143	10	25	84	7	16	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	1/0	t0002	3087	118	30	24	50	5	8	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0003	3087	48	0	9	36	0	3	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0004	3087	34	9	10	1	4	10	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0005	3087	22	18	3	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0006	3087	6	6	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0007	3086	4	4	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0008	3087	3	0	0	0	1	2	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0009	3087	3	3	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0010	3087	3	3	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0011	3087	2	2	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0012	3087	1	0	0	1	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0013	3087	1	1	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0014	3087	1	1	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0015	3087	1	1	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0016	3087	1	0	0	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0017	3087	1	0	0	1	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0018	3087	1	0	0	0	1	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0019	3087	1	1	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0020	3087	1	0	0	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0021	3087	1	0	0	1	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0022	3086	1	0	1	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0023	3087	1	1	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0024	3087	1	0	0	1	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	t0025	3087	1	0	0	1	0	0	copy fasta	FAM98B	chr15	38449127	38492710