JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM98C_chr19_38398093_38414084	1/1	t0001	264	289	60	54	130	10	33	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	t0002	264	65	12	8	43	1	1	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	t0003	264	17	0	0	17	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	t0004	264	6	6	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	t0005	264	2	2	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	t0006	264	1	0	0	0	1	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM9A_chrX_8785795_8806383	1/1	t0001	521	278	55	54	128	13	26	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	t0002	521	10	8	2	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	t0003	521	7	6	1	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	t0004	521	3	0	0	3	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	t0005	483	2	0	0	1	0	1	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	t0006	520	1	0	0	0	0	1	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	t0007	519	1	0	0	1	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	t0008	522	1	1	0	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9B_chrX_9019232_9039127	1/1	t0001	1543	229	45	42	104	9	27	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0002	1543	8	6	2	0	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0003	1543	4	4	0	0	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0004	1544	4	0	1	3	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0005	1544	3	3	0	0	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0006	1542	2	0	0	2	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0007	1545	1	0	0	0	0	1	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0008	1542	1	0	0	1	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0009	1543	1	0	0	1	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0010	1542	1	1	0	0	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0011	1543	1	0	0	1	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0012	1543	1	0	0	1	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0013	1543	1	1	0	0	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	t0014	1543	1	0	0	1	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9C_chrX_13030617_13049620	0/0	t0001	577	169	26	30	92	5	16	copy fasta	FAM9C	chrX	13030617	13049620
FAM9C_chrX_13030617_13049620	1/1	t0002	577	143	41	24	56	8	12	copy fasta	FAM9C	chrX	13030617	13049620
FAM9C_chrX_13030617_13049620	0/0	t0003	577	2	2	0	0	0	0	copy fasta	FAM9C	chrX	13030617	13049620
FAM9C_chrX_13030617_13049620	0/0	t0004	576	1	1	0	0	0	0	copy fasta	FAM9C	chrX	13030617	13049620
FAN1_chr15_30898915_30948108	0/0	t0001	1796	108	25	17	44	6	16	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0002	1796	65	11	14	31	1	8	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0003	1796	44	17	14	3	3	7	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0004	1796	40	17	8	8	1	6	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/1	t0005	1796	9	0	0	4	3	1	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0006	1796	8	5	3	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0007	1796	6	5	1	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0008	1796	4	0	0	4	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0009	1796	4	4	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0010	1796	4	3	1	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0011	1796	3	3	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0012	1796	2	0	0	2	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0013	1796	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0014	1796	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0015	1796	1	0	0	0	0	1	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0016	1796	1	0	0	0	0	1	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0017	1796	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	t0018	1796	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108